Darwin the Newtonian. Part II. Is life really 'Newtonian'?

In yesterday's post I suggested that Darwin had a Newtonian view of the world, that is, he repeatedly and clearly described the organisms and diversity of life as the product of evolution, due to natural selection viewed as a force, which in an implicit way he likened to gravity.  At the same time, he knew that there was widespread evidence of various kinds for long-term evolutionary stasis, which a prominent geologist has recently called  "Darwin's null hypothesis of evolution," the idea that evolution does not occur if the environment stays the same.

That suggests that a changing environment leads to a changing mix of organisms that live in the environment, including of their genotypes.  It makes evolutionary sense, of course, because environments screen organisms for 'fitness'.  However, its negative--no change in the environment implies no evolution-- doesn't make sense and badly misrepresents what is widely assumed that we know about evolution. Even if we define evolution, as often done in textbooks, as 'change in gene frequencies' such change clearly occurs even in stable environments.  Mutations always arise, and selectively neutral variants, that is, that don't affect the fitness of their bearers, change in frequency by chance alone, not by natural selection, which means that at the genomic level evolution still occurs. It's curious that not only can organisms stay very similar in what seem like static environments, but also can be similar even in changing environments.

The idea of dual environmental-genetic stasis is an inference made from species that seem to stay similar for long time periods in environments that also appear similar--but how similar are they really?

Indeed, there are several problems with the widely if often implicitly assumed 'null hypothesis':

  1.  It is a very narrow assumption of the meaning of 'evolution', implicitly implying that it refers only to functionally important traits or their underlying genotypes. As we will see, there are ways for genetic change (and even trait change) to occur even in static environments, so that an unchanging environment doesn't imply no biological change.
  2.  It implies that 'the environment' actually stays the same, although 'environment' is hard to define.
  3.  It implies a tight essentially one-to-one fit between genotype and adaptive traits, so that in unchanging environments there will not be any functional genomic change.

All of these assumptions are wrong.  In essence, there cannot be 'the', or even 'a' null hypothesis for evolution.   Sexual reproduction, horizontal transfer, and recombination occur even without new sequence mutation.  To ignore that along with assuming a stationary environment, and adopt a null hypothesis that had anything like mathematical or Aristotelian rigor would be to reduce evolution's basis to something like this not-very-profound tautology:  Everything stays the same, if everything stays the same.

So let's look at this a little more closely
From the fossil record, we infer that some species stay the 'same' for eons, sometimes millions of years.  Then they change.  Gould and Eldridge called this 'punctuated equilibrium' and it was taken as a kind of up-dated version of Darwinism--mistakenly, because Darwin recognized it very clearly at least by the 6th edition of his Origin.  And while some aspects of animals and plants can hardly change in appearance for long time periods, close inspection shows that only some aspects of what can be preserved in fossils stays similar; other aspects typically change.  Also, speciation events occur and some descendants of an early form do change in form, even if the older species seems not to change. So we should be very careful even to suggest that environments or species really are not changing.

But mutations certainly occur and that means that even for a set of fossils that look the same, the genomes of the individuals would have varied, at least in non-functional sequence elements.  That itself is 'evolution', and it is misleading to restrict the term only to visible functional change.  But genetic drift is just the tip of the molecular evolution iceberg.  It is now very clear that there are many ways for an organism to produce what appears to be the same trait--and this is true both at the molecular and morphological levels.  That is, even a trait that 'looks' the same can be produced by different genotypes.  I wrote about this long ago in a rather simple vein, calling it phenogenetic drift, and Andreas Wagner in particular has written extensively about it, with sophisticated technical detail, in his book The Origin of Evolutionary Innovation, and this paper.  (The images are of my general paper and Wagner's book given just to break up the monotony of long text! ; he has written a more popular-level book as well called Arrival of the Fittest, which is a very good introduction to these ideas).

Recent exploration, with great detail



A modest statement of principl


Wagner explores this in many ways and among his views is that the ability of organisms to evolve innovative traits is based on the huge number of overlapping, essentially similar ways it can carry out its various functions, which allows mutations to add new function without jeopardizing the current one. Redundancy is protective against environmental changes as well as enabling new traits to arise.

This is in a sense no news at all. It was implicit in the very foundational concept of 'polygenic' control-- the determination of a trait by independent, or semi-independent of many different genes.  The way complex traits are thus constructed was clear to various biologists more than a century ago, even if the specific genes could not be identified (and the nature of a 'gene' was unknown).  A fundamental implication of the idea for our current purposes is that each individual with a given trait value (say, two people with the same height or blood pressure) can have its own underlying multi-locus genotype, which can vary among them.  Genotypes may predict phenotypes, but a phenotype does not accurately predict the underlying genotype (a deep lesson that many who promote simplistic models of causation in biomedical contexts should have learned in school).

And of course that does not even consider environmental effects, even though we know very well that for most characters of interest, normal or pathological, 'genetic' factors account only for a modest fraction of their variation. And, of course, if it's hard to identify contributing genetic variants, it's at least as difficult to identify the complex environmental contributors who make inference of phenotype from genotype so problematic. That is, neither does genotype reliably predict phenotype, nor does phenotype reliably predict genotype and the idea that they do so with 'precision' (to use todays' fashionable branding phrase) is very misleading.

In turn, these considerations imply that even if we accepted the idea of natural selection as a Newtonian deterministic force, it works at the level of the achieved trait, and can ignore (actually, is blinded to) the underlying causal genetic mechanism.  There can be extensive variation within populations in the latter, and change over time.  Just because two individuals now or in the past have a similar trait does not imply they have the same underlying genotype and hence does not imply there's been no 'evolution' even in that stable trait!

In this sense, evolution could be Newtonian, driven by force-like selection, and still not be genetically static.  But there's more.  How can there actually be stasis in a local environment?  If organisms adapt to conditions, then that in itself changes those conditions.  Even within a species, as more and more of its members take on some adaptive response to the environment, they change their own relative fitness by changing the mix of genotypes in their population, and that in turn will affect their predators and prey, their mate selection, and the various ways that the mix of resources are used in the local ecology.  If, say, the members of a species become bigger, or faster, or better at smelling prey, then the distribution of energy and species size must also change.  That is, the 'environment' cannot really remain the same.  That ecosystems are fundamentally dynamic has long been a core aspect of population ecology.

In a nutshell, it must be true that if genotypes change, that changes the local environment because my genotype is part of everybody else's 'environment'. In that sense, only if no mutations are possible can there be no 'evolution'. Even if one wants to argue that all mutations that arise are purged in order to keep the species the 'same', there will still be a dynamic mix of mutational variants over time and place.

One could even assert that an essence of Darwinism, literally interpreted, is that environments cannot be the same because the adaptation of one species affects others, even were new mutations not arising, because it affects the fitness of others. That is what his idea of the relentless struggle for existence among species meant, so stasis did cause him a bit of a problem, which he recognized in the later edition of the Origin.

I think that in essence Darwin viewed natural selection as being basically a deterministic force, like gravity, corresponding to Newton's second law of motion. And the idea of stasis corresponds to Newton's first law, of inertia. Today even many knowledgeable biologists seem to think in that way (for example, invoking drift only as a minor source of 'noise' in otherwise force-like adaptive evolution). Selective explanations are offered routinely as true, and the word 'force' routinely is used to explain how traits got here.
But there are deep problems even if we accept this view as correct.  Among other things, even if natural selection is really force-like, or if genetic drift exists as a moderating factor, then these factors should have some properties that we could test, at least in principle.  But as we'll see next time, it's not at all clear that that is the case.

Darwin the Newtonian. Part I. The Darwinian worldview

History shows that, even in science, things that everyone has long taken for granted may not be true.  Thinking in ways more carefully constructed to be restrained by what we actually know is often difficult, and the temptation is to believe what we want to believe. There are many normal, human, not to mention professional reasons for this.  But it's not good for science.  What may appear to be clear-cut 'objective' concepts about the material world can verge on the abstract or even philosophical, based on subjective opinion more than fact.  As we've discussed before, in a sense this is due to our need in evolutionary biology to rely on statistical tests based on internal comparisons, rather than to use statistical methods to test hypothesized, externally derived laws of nature (see this series and earlier--search on 'statistics' or 'p-value').

In 1859, Charles Darwin's Origin of Species culminated what considerable contemporary rumination had been suggesting, with his assertion that life today is the result of a material, historical process, by which current organisms have arisen by divergence from a common ancestry.  His synthesizing insight transformed biology in many ways.  Before that biology had largely been a descriptive science.  Before Darwin, with a few very speculative exceptions, the best causal explanations for the diversity and adaptations of organisms had been that God created them on an ad hoc basis.  Darwin saw otherwise, but his thinking was embedded in his era's general views about science.

Thanks to developments in the European Enlightenment period, by Darwin's time causation in nature was being viewed, by scientific thinkers at least, as based upon natural laws.  The Newtonian view of the cosmos was the prevalent one and, in keeping with this, Darwin adopted an implicitly quantitative, law-like view of biology.  As far as I know, Darwin was not a diligent student except in relation to areas like geology and botany, and he certainly was not mathematical (he himself said so).  However, he must have known at least something about Isaac Newton (a rather famous Cambridge predecessor).

Isaac Newton; 1689 by Godfrey KnellerWikipedia

Still, whatever he formally knew of Newton's laws of motion Darwin essentially accepted some of Newton's basic laws of motion, which we can state as follows:
1.  An object at rest remains at rest (law of inertia)
2.  Objects move or change motion only when force-like acceleration is applied, (and the greater the mass of the object the greater the force needed to change its motion)
3. Every action involves an equal and opposite reaction (when pushed, an object pushes back)

There are, I think, important analogs in Darwin's thinking, and there is still today widespread uncritical application of Newtonian-like thinking to Darwin's ideas.  The other day, I heard a deservedly famous and prominent geologist say that Darwin's 'Null hypothesis of evolution' was that unless the environment changes, no evolution will occur. This is analogous to the law of inertia, and I think it's actually fundamentally quite wrong, but we will see why it seems tempting and plausible.

The classical idea, still asserted without much if any questioning, is that organisms are fitted to their environment.  Analogous to the Newtonian law of inertia, if the environment doesn't change, neither will the organisms.  Darwin was, to my knowledge, not wholly explicit about this, but it was at the very least implicit in his view as expressed in The Origin of Species.  At least, by the 6th edition he recognized that there can be long time periods when organisms seemed not to change.

However, and this is analogous to Newton's second law, if the environment changes, then in a force-like way it screens the varying genomes of organisms, favoring those that are suited to the new conditions.  The force Darwin called natural selection.  I'm mixing bits of new and Darwin-time terminology here, but the gist of Darwin's view is that natural selection is a deterministic force, which he likened to the force of gravity in his law-like, deterministic worldview in regarding to 'motion' (change) in organisms.  Indeed, he many times asserted that the smallest difference among organisms would be detected and screened by selection.

After this has gone on for a while, the selective 'acceleration' ceases because the organisms are now adapted to their surroundings.  At that stage, the law of inertia takes over. His theory of inheritance was fundamentally wrong, but the Darwinian idea expressed in modern genetic terms is that the organisms in a population at any time and place vary genetically, and when the environment changes, those whose genotypes are best suited to the new environment will reproduce more prolifically, and will increase in frequency, driving inferior genotypes out of the population.

The Darwinian analogue to Newton's third law of motion is that changes in the nature of one organism in a local area improves its use of, and thereby alters, its local ecology.  The faster foxes catch the rabbits and proliferate. But this in turn makes the rabbits hoppier.  This then sets up a new force--in the local organisms--that Darwin referred to as the relentless 'struggle for existence.'

There are some issues in this view that are not well enough appreciated.  Darwin's endless struggle for existence suggests a continuing maelstrom of change, and yet it has been noticed that some species, based, for example, on ancient fossils.  Likewise, widely dispersed species that seemed similar across their areas of habitation implied that they had long had been static--because it takes a long time to spread over vast geographic areas.   In the case of some dinosaurs, a hundred or more million years, and based on some bacterial fossils, several billion.

Stromatolite (bacterial fossil); Western Australia, By Didier Descouens 


The idea this suggests is one of evolutionary stasis. This was recognized by Darwin, at least by the 6th edition of the Origin, and he mused over how periods of stasis would lead eventually to evolutionary change.   This idea, often now called 'punctuated equilibrium,' was claimed by Gould
in his final tome to be his own life's main discovery and contribution.  Perhaps he had not read Darwin closely enough?

An important point here is to recognize what Darwin was trying to account for.  Either selection is a relentless force-like aspect of nature, or there can be a static period when no force is being applied. How can both be true?

One answer is that there is no way for genotypes to be static, because mutations always arise.  Even if some are purged by selection's force, many will be selectively neutral and genomic evolution will always be occurring.  However, what we can see in fossils is only some aspects of morphology.  This means that while genomes are evolving, at least neutral parts, some aspects of traits persist, for adaptive or whatever other reason.

The idea of an evolutionary 'Null hypothesis' is hence elusive.  In one sense, some trait may not change unless the selective environment changes.  In another sense, selection can maintain functionally adaptive traits, while other traits and neutral DNA sequences change.  The traits may not 'evolve', but the sequence does.

Such ideas go against even Darwin's idea of life as an endless universal struggle, and perhaps why he had to do some rationalizing to account for apparent stasis.

Even this account for stasis of a single species would seem incompatible with the view of a relentless struggle among species that drives all of them in the endless rat-race of adaptation.  In that reality every part of an ecosystem affects every other part, so how can there be stasis?

We will think about some of these issues in the next three posts.  First, we'll ask whether life really can be viewed as 'Newtonian,' as Darwin did.  Then, we'll ask whether natural selection and genetic drift actually exist as they are universally characterized to be.  We'll see that our theories and our methods of inference, leave major issues open even about these fundamental aspects of the theory of life.

They were all my future specimens. And they died.

Without skeletal collections we'd struggle to do much evolutionary biology, especially when it comes to studying fossils.

We'd hate to let all those specimens go to waste, just languishing there in museum drawers. Sciencing them brings honor to their death. (Thanks for the new verb, Andy Weir.) But while we're learning from skeletons we can never forget that they're dead.

So although many of our samples are animals that were hunted by President Theodore Roosevelt (thanks Smithsonian!) or Major Powell-Cotton (thanks Powell-Cotton museum!), many of them, especially when it comes to human skeletons, are ones that died of "natural" causes.

You're thinking, well, duh. Well, yeah. Duh. But sometimes what's obvious still isn't so obviously important until someone goes to the trouble to very carefully consider it.

If the "osteological paradox" has already come to mind, that's probably because you're familiar with the classic paper "The Osteological Paradox" co-authored by a certain Mermaid and other former graduate school professors of mine.  Although the paper discusses issues that are more complicated and more specific than we need to hash out here, "osteological paradox" is a great term for the conundrum that scientists face when reconstructing things like health, fitness, and adaptation in past populations from the remains of the individuals who died.

Naturally, if you've been raised on "osteological paradox" thinking, it's one of the first things that comes to mind when you see a visually stunning study by my colleagues that analyzes pelvic morphology of dead individuals to reveal differing adaptive morphologies in the pelves of males vs. females.

Sexual dimorphism in the human pelvis has been known for quite some time, and it's already well-understood that the differences are largely located in the dimensions of a woman's birth canal. But this new study shows that differences are observable from birth and that women at post-reproductive ages do not retain the obstetrically-beneficial dimensions that younger women do during their fertile years. One of the arguments this new paper makes is that human female pelves are adapted to be most accommodating for childbirth during the child-bearing years. And that very well may be the case. However, these claims for adaptation, like most based on human skeletal samples, were based on women who were dead and, thus, not adapted.

In this context, the concluding paragraph of "The Osteological Paradox" is worth quoting:

"...choosing among competing interpretations of the osteological evidence requires tight control over cultural context as well as a deeper understanding of the biology of frailty and death. These problems deserve far more attention than they have received to date if we are to make sense of the biomedical consequences of the major social and environmental changes that have occurred during the course of cultural evolution."

And that could be extended to "biological evolution" as well. Maybe it has been in a later paper.

Anyway, when we're looking at dead humans with an evolutionary mindset, it's probably good to ask whether we can know if selective pressures were the same across the timespan covered by the sample. It's also probably good to ask whether environmental conditions were the same across the timespan covered by the sample. It's also probably good to sing this to ourselves as we design our evolutionary study of the human skeleton:



Şifalı Nisan Yağmurları


   Nisan ayının 14'ünde başlayıp, Mayıs ayının 14'ünde biten yağmurlara Nisan yağmurları deniyor. 

 Sonbahar yağmurlarından kaçınmak, bahar yağmurlarında ise sılovmoyşın, döne döne ıslanmak gerekiyor. (Fonda Teri Meri eşliğinde) 


⭐ 

Sebebi, hikmeti, şifası pek çok. Çektiğim fotoğraflar eşliğinde, aşk ile buyrun ♥




* Yılanların zehiri, balıkların incisi, hatta bal arısının balı gibi pek çok harikulade nimet hep bu yağmurun suyundan oluşuyor.

* Nisan yağmuru dertlere devâ, hastalıklara şifâ.

* Sular içerisinde en saf su Nisan yağmurunun suyu.

* Nisan yağmuru ile çalınan yoğurt tutar. (Tecrübe ile de sabittir diyorlar lakin ben ömrü hayatımda bir kere yoğurt mayaladım o da yağmura denk gelmedi)

* Nisan yağmurunda ıslanan yeni elbise çürümez. 

Saç dökülmez. 




 Nebevi olarak da nurlu beyanlarda şöyle geçiyor imiş:


 Beni hak Peygamber olarak gönderen Cenâb-ı Hakk’a yemin ederim ki, çocuğu olmayan bir erkek, bu sudan hanımına içirirse Allah'ın izni ile hanımı hamile kalır. 

 Hanımının başı ağrıyan bir erkek bu sudan hanımına içirirse, bu su ona (sıhhati için) yeterlidir. 

 Rüzgar ona zarar vermez, çirkin haller kendisine isabet etmez.

 Bel ağrısından, karın ağrısından, şikayeti kalmaz.

 Alaca hastalığından korkmaz.

 Göğüs ağrısı çekmez.

Kalbine gelen vesvese gönlünden çıkar gider.

 Ayrıca manevi hastalıklar için fayda vericidir.

 Yağmur , Allah'ın en son ve yeni yarattığı bir mahluktur. Bereketi en çok olandır.




 Risalei Nur'da Mirac kandili ile yağmur hakkında bir de güzel müjde var imiş. 


  Leyle-i Mi'racınızı tebrik ve içinde ettiğiniz duaların makbuliyetini rahmet-i İlahiyeden niyaz ederiz.  Ve bu havalide Mi'rac gecesinden bir gün evvel ve bir gün sonra müstesna bir surette rahmetin yağması işarettir ki, bu vatanda bir umumî rahmet tecelli edecek, inşâallah.




Velhasıl azizim,

Nisan yağmurundan kaçmayın, şemsiye kullanmayın, ıslanıverin gitsin. 

 Hatta benim gibi yalınayak dolaşın dışarlarda. 

(Nemli tiplerden olmadığım için aman hastalanırım diye düşünmedim. Koyverdim kendimi suya toprağa. Erzurum kızıyız evelallah) 



   Bu arada tesettürlü hanımcanlara bir küçük öneri, gece yağmurda sitenizde veya çevrenizde tenha yerlerde saçlarınızı da ıslatabilirsiniz. 

 Hatta ben ağaçların altına girip dalları silkeledim.  
 (Oynayın işte çocuklar gibi, içinizden nasıl geliyorsa)



Gelsin şifalar şifalar...



Not: 

 İstiyorum ki yazılarımı herkes okusun. O yüzden ecnebi arkadaşlar için sağ üste Google translate koydum ama çeviri yapınca cümlenin başı sonu ayrı telden çalıyor.
 Yani pek güvenmeyin derim. En iyisi bir Türk arkadaş bulun o anlatsın. 

 Mahrum kalmayın, üzülürüm sonra. Burada hepimize yer var... ♥

(Bu notu Türkçe yazmam da ayrı bir ironi lakin ne yapaydım comic İngilizcemle üstüme mi güldüreydim)



⭐ 



On shouting, "SEED MY BABY WITH MY VAGINAL MICROBES!"

Co-authored by Emily Pereira, Anthropology major, University of Rhode Island

When I was pregnant, the human microbiome was hot. And news about the microbiomes of newborns was even hotter, at least to my eyes and ears because I was on the verge of having one.

This was in 2014. Studies were starting to find that babies born via c-section have different microbiomes than babies born vaginally. These findings were being interpretively linked to health problems down the road. 

Here’s a write-up of one study of a few 4-month-olds that I came across while pregnant: “Infant gut microbiota influenced by cesarean section and breastfeeding practices; may impact long-term health


And today studies continue to pop-up that find differences in baby microbial composition and then suggest those differences may be linked to future health problems. For example, here’s a recent one from 2016 in JAMA Pediatrics
“CONCLUSIONS AND RELEVANCE The infant intestinal microbiome at approximately 6 weeks of age is significantly associated with both delivery mode and feeding method, and the supplementation of breast milk feeding with formula is associated with a microbiome composition that resembles that of infants who are exclusively formula fed. These results may inform feeding choices and shed light on the mechanisms behind the lifelong health consequences of delivery and infant feeding modalities.”
These discoveries about c-sections seem important because microbes are now famous for being linked to all kinds of health troubles. 

According to the American Microbiome Institute... 
“studies are finding that our bacteria (or lack thereof) can be linked to or associated with: obesity, malnutrition, heart disease, diabetes, celiac disease, eczema, asthma, multiple sclerosis, colitis, some cancers, and even autism.”
And of course many of those same things have been epidemiologically traced back to birth by c-section. Here’sa report on one study, “published in the British Medical Journal, [that] found that newborns delivered by C-section are more likely to develop obesity, asthma, and type 1 diabetes when they get older.”

Anotherfound that, “people born by C-section, more often suffer from chronic disorders such as asthma, rheumatism, allergies, bowel disorders, and leukaemia than people born naturally."

One can’t help but assume it’s all connected. If microbes are to blame for this list of problems and if c-sections are too and if c-sections are causing babies to have different microbiomes, then the following conclusion seems like a no-brainer: we need to be wiping c-sected babies with their mother’s vaginal juices.

So although I did basically nothing to prepare for a c-section (d’oh!), I imagined that if my childbirth came to surgery, that it would be really easy to avoid the risks to my baby's health by simply wiping him down with something soaked in my lady fluids.

I had even caught wind of a trial of this procedure, written-up somewhere, and so I mentioned it to my OB at a prenatal visit. She said she’d heard of it and that there was a term for it but the term escaped her. The idea excited her, but it wasn’t even remotely close to being part of regular clinical practice yet. Remember, this was summer 2014. Sensing it was too soon and out of reach, I changed the subject of conversation. Yet, I continued to believe that someone would just help me out with the whole vaginal swabbing thing if need be. It seemed simple enough. No biggie.

At the time, I didn’t Google around for tips or instructions so I don’t know what the Internet was offering up to would-be mothers/vaginal-microbe believers like me. But today it’s quite easy to find encouragement to D-I-Y transform your kid’s c-sected microbiome into a naturally-born one.

Here, let Mama Seeds explain:
“In the event of a c-section, be proactive. Mamas, we know this recommendation is not without its “icky-factor," but WOW it makes perfect sense when you think about it, and some believe it will be a standard recommendation in the future. Here goes: if your baby is born via c-section, consider taking a swab of your vaginal secretions and rubbing it on your baby’s skin and in her/his mouth. I know, ick. But when babies traverse the birth canal, they are coated in and swallowing those secretions/bacteria in a health-promoting way, so all you’re doing is mimicking that exposure. Don’t be afraid to ask your midwife or OB to help you collect the vaginal swabs—or do it yourself, if you’re comfortable. You have all the available evidence on your side.” - Michelle Bennett, MD is a full-time pediatrician, a Fellow of the American Academy of Pediatrics, a mother of two, and a founder of Mama Seeds.
Like I said, I didn’t have Mama Seeds. But I didn’t need Mama Seeds. While I was being wheeled into emergency cesarean surgery, I still shouted “SEED MY BABY WITH MY VAGINAL MICROBES!”

The reaction from the hospital staff? There was no reaction and, surprise surprise, there was no artificial seeding of my baby’s microbiome.

And that’s good. That’s how it should have gone down because my request was not based on scientific thinking. I hope you'll forgive me. I was pregnant. I wasn’t myself.

Slowly I’m becoming myself again, though, and thanks to a keen student, Emma Pereira, this post’s co-author, I’ve learned quite a bit about the science behind whether I should have seeded my newborn with my vaginal microbes. And the answer to anyone who’s wondering is a resounding NO. At least for now.

Here’s why.

1.   We don’t know if it’s necessary. Despite the increasing numbers of studies, no one to our knowledge has looked longitudinally at the microbiomes of humans born via c-section to find out if the changes detected (in very small samples) early on in these studies actually last, let alone if they can be causally linked to differences in health. It seems like the money and the technology is there to identify (via genetic sequencing) myriad microbial species, but the time and energy just isn’t there to do much else. So, although there is a growing literature, the dots aren’t connected yet. A graphic may help explain what we've learned: 



2.  You could actually harm your baby. Because there is currently no known good to come of seeding one’s c-sected baby with one’s vaginal microbes, there can only be bad. Yes, authors of this studypublished recently in Nature Medicine took a bunch of gauze that had been sitting in the mother’s vagina for an hour and swabbed 4 babies for a duration of about 15 seconds right after their birth by c-section and then found a significant difference in their microbiome at 30 days-old compared to babies who weren’t treated.  The microbiome wasn’t identical to vaginally born babies, but at least it wasn’t identical to those poor c-sected controls who didn’t get swabbed, right? Well, maybe wrong. First, please revisit number 1. And, second, maybe causing a baby to have a c-sected microbiome is not worse than seeding a baby with genital herpes, which is a very real possibility in practice, outside of these early, highly controlled pilot studies. As reported in Should C-section babies get wiped down with vagina microbes?“the procedure could unknowingly expose newborns to dangerous bugs, pathogens that babies born by C-section usually avoid. Group B streptococcus, which is carried by about 30 percent of women, can trigger meningitis and fatal septicemia... Herpes simplex virus can lead to death and disability in newborns. And chlamydia and gonorrhea can cause severe eye infections.”

So, again, as of right now, there is no reason to seed one's c-sected baby with one's vaginal microbes. And there are very good reasons not to! 

We think that the temptation to blame the rise of numerous complex health problems to something as simple (and easily knowable) as the way we’re born is similar to the temptation to reduce these very same complexities to what’s coded in the genome. For some people, maybe even many, it may turn out to be this simple! But we’re far from knowing whether that’s true. 

Spare your baby from meddling with his microbes until the evidence is there. 

Tutunmalı hayata




 Tutunmalı hayata

tüm acılarına rağmen  tüm yaşanmışlıkların   iki dudak arasında bıraktığı dudak kamaştıran midede  bıraktığı yanma hissine rağmen


Dünün bu güne  hazırladığı tuzaklara umursamadan gözyaşlarını en güzel günler umuduyla harmanlayıp  tuzunu yağını sevginle akıtıp sunabilmek akşam yemeğine .



 Yaşadıklarının yaşayacaklarına teminat olacağına, emin olmana rağmen acılarına  hayal kırıklıklarına  köşelerine ve tüm kırışmışlığına bir ütü vurabilmeli .


boyadığında görünmeyen ak saçların misali

seninse  aklından hiç çıkmayan yüreğinde 

derin yaralar bırakan yıpranmış bir ömürün

dip boyalarını yapabilmeli tüm yaşanmışlıklarınla 


Dem kokusunu çekebilmeli içine posasını  bırakabilmeli çaydanlığın en dibinde  


Yaralarını saklayabilmeli, başkalarını düşünürken kendini  nasıl unuttuğunu, önemsememeli

kendi pansumanını yapabilmeli sargılarını sarıp merhemini icat etmeyi bilmeli

kaybolan dünlerin bu günlere nasıl harabeler bıraktığını belli etmeden tutunmalı hayata

Her deprem sonrası dimdik durmalı ardçıların geleceğini bile bile yitirdiklerin için   hıçkıra hıçkıra ağlarken  bunu başkalarına duyurmamayı bilmeli .



  En zifir siyah  gecenin  içinden çekip alabilmeli bir ışık parçasını  aydınlatmalı tüm dünyayı

  Tutunmalı hayataa...
28.01.2012


Kişisel Blog Yazarları Ne Düşünüyor?





  Sevgili Simurg'un Kalemi ve Bir Kısanın Günlüğü  beni م lemişler.
Kendilerine şükranlarımı sunarak, icabet etmek elzemdir hissiyatıyla cevaplıyorum.


Blogla tanışmam nasıl oldu?

  İçimdeki acil yazmam gerek dürtüsüne daha fazla karşı koyamadım. Blogumu cep telefonumdan bir günde açtım. (Biraz baş ağrısı, birkaç fincan kahveye mâl oldu) 


Neden blog yazıyorum?

   Azizim benim blogum, böyle nasıl desem kımıl kımıl (gezi), yumuş yumuş (kitap), tatlış tatlış (film) şeylerle ilgili. 
 İstiyorum ki masal dünyamda herkes mutlu olsun. Bu yüzden blogumun bir nömreli prensibi ezici, üzücü, bozucu mevzuların yer almaması.


Yakın çevremdeki insanlara bloğumdan bahsediyor muyum?

  Duymayan az kişi kalmıştır, herkese hunharca anlatıyorum. Yetmiyor yazılarımı gönderiyorum. (Psikolojik baskı mı, tabi ki hayır. Şirin ısrar taneleri).


İlk yazım ile son yazım arasında ne gibi farklar var?

   Tanıtım yazısı idi, kaldırdım sonra. Son yazım dizi yazısı. Tarzım aynı (Alışılıyor korkmayın).


Blog yazmak yaşantıma neler kattı?

 Yeni yeni şeyler öğrendim, öğreniyorum. Yazılarımdaki yorumlar faydalı olduğumu hissettiriyor.  Mutlu oluyorum. 
  Blog alemini samimi ve kaliteli buldum. Bir de telefonumun şarjı daha çabuk bitiyor.


Diğer blog sahipleri ile iletişim kuruyor muyum?

   O nasıl lakırdı, tabi ki.
Yüz yüze olmadı henüz ama benim parmaklarım korkak değil,  üşenmem gül gibi yazarım yorumlarımı. Konularımdaki yorumlarla da güzel bir iletişim kuruldu. Daim olsun inşallah. 


Hangi kaynaklardan ilham alıyorum?

  Konularım bana özgü. İnternete girip de ne yazsam demiyorum. Bu benim masalım.


Rahatsız olduğum bir konu var mı?

  Yaklaşık 5 aydır buralardayım, şimdilik yok. Olursa söylerim.


Yakın arkadaşlarıma blog yazmayı önerir miyim?

   Bittabi... 
Herkes yazsın, coştursun. Lakin millet çoluk çocuktan başını kaldıramıyor. 
 Bebek gazından, uykusundan, iştahından konu edebiyata, sanata gelemiyor bir türlü. Ya işte ben de hepsini mütebessim, başımı sallayarak dinliyorum (Napcan hayat).


   Velhasıl azizim sık sık bloguma uğrayın, iyi gelir...




On this day in 1986

Lost in an African Jungle*

It all began in L.A. California when I had to go to Africa on safari, to hunt the Wild Weirdo Snake. Because I was a scientist and had to study one. So I went to Africa to the big bush (the grassy swamp land). I was there but suddenly I got lost. Luckily, I brought a map. But it started to rain and my map got soaked. So I couldn't use that. But then, in the midst of the jungle, I heard what sounded like Indians. So, I ran, but they were coming from all directions. They came and got me. They had a Wild Weirdo Snake for a pet. So they wrapped it around me. I died. So they ate me. And for the rest of my life my head hangs from a stick.

The End

Is this the Wild Weirdo Snake? (source)




*Thanks to my mother for saving this.

Kardelene dönüşmek...

Karşılaştığımız zorluklar karşısında değişmeden kalmak sanırım olası değil. Davranış biçimlerinin hepsi değişiyor kardeşim. Mesela daha güçlü oluyorsun..sonraaa daha duygusuz oluyorsun.. sonraaa daha acımasız..daha umarsız oluyorsun. Bazen hayatımın bu hale gelmeden önceki halini çok özlüyorum. Gözlerimden yaş akarak gülme krizlerine girdiğim..dostların gerçek dost oldukları.. arkamdan iş çevrilmelerin olmadığı bir dünya..
Bütün dünyaya tek başıma savaş verirken değişmemek imkansiz gerçekten.Çok şeyden vazgeçiyorsunuz. Sevmekten..sevilmekten..çoğu hayalden.. en azından ben geçtim.. Bir hayale tutunurken..hayatı kurtarmaya çalışırken çok şeyden vazgeçtiğimi fark ettim. İsteyerek veya istemeyerek..oldu napalım di mi?..
Her gün ama her gün mesleğimi bırakmam için bir neden çıkıyor karşıma. Bazen bir duvara tosluyorum, bazen karaktersiz tiplerle uğraşıyorum, bazen kardeşim dediğim biri sırtımdan bıçaklıyor. Bazende garip bir bekleyiş...
Diyorum Duygu..git buralardan..napiyorsun..neyle uğraşıyorsun..Kendi kompleksleri içinde kavrulmuş insanların beni yıkmaya çalıştıklarını gördükçe incinmiyor değilim. Bende insanım değil mi eninde sonunda.. Bazen ben bile unutuyorum bunu..hatta kadın olduğumu.. Hayatimin icine aldigim guvendiklerim bana zaten 'HACI'derler..

Benim başka seçeneğim olmadı bu hayatta.Bana bir hayat verildi ve ben o yolda bir şekilde yürüyorum.

Şimdi size çok ayrıntılara girmeden bütün hikayenin arkadasındaki hikayemi anlatacağım.
Hani bir anda insanın hayatı değişir derler ya. İşte öyle bir gece benim bütün hayatım değişti.
İnanılmaz varlıklı bir haldeyken babamın kalp krizi geçirmesi sonucusunda bir gecede tüm hayatım tepetaklak oldu. Platinium kartımı çıkardığım günler..özel yapım arabama bindiğim..böyle havalı havalı louis vuittonlarda zaman geçirdiğim olmuştur yani :)Bildiğiniz şatoda yaşayan bir tiptim ben. Çok havaşlıydım belli değil..Kafanızda öyle tiki tiplerden canlanmasın. O halde bile çalıştım ben hep ve hep ayaklarım yere bastı. ama alışınca ve bir gecede tam tersine dönünce insan bir garip oluyor işte.
O hafta bütün arabalar evler satıldı. borçlar borçlar.. Baba çalışamıyor,anne ev hanımı tabi.iş başa düştü o zaman. Tek başıma herşeyi sırtladım. Her zaman güçlü müydüm.hayır.. Pazarda çalışmaya başladım. Takı tasarlayıp pazarlara çıktım. Üniversite mezunuyum kadınım diye barındırmadılar. Dayandım. Kitap okuma manyağımdır belki bilmezsiniz..2 bin tane kitabım vardı. Hepsini sattım. Kıyafetlerimi sattım. En çok kitaplarımın gitmesi koydu ama. Halen daha o gün aklımda. bağıra bağıra ağlamıştım. Sanki bütün hayatım ağlıyor gibi. Dostunu kaybetmek gibiydi. Pastacı olmayı kafama takmıştım. Okul paramı biriktirdim. Pazardan kazandığım para bir borca bir okul taksidine gidiyordu. internet üzerinden kekler turtalar falan satmaya başladım. okul paramı biriktirdim. Hem okumaya başladım hem çalıştım. Un ve yağdan hamur kavurduğum günleri bilirim ekmek alamadığımız için. Borç istediğim dostlarımın bana sırt çevirdiğini bilirim. Annemin kenara çekilip sessizce ağlayışlarını bilirim. Babamın hayatımda ilk defa haykırarak ağladığını.. Yüreğimin dayanmasını sağladım. O gün bugündür canla başla hiç durmadan çalışıyorum. hiç durmadan. Duygu yorulmuyor musun hiç diyeceksiniz biliyorum. Ne kadar yorgun olduğumu hangi kelime anlatır bilemiyorum. Tek dileğim pembe bir bisiklet..Böyle saçma bir hayalim var ama hangimizin yok ki?.. Daha bir sürü şey var ama onları anlatamam buradan..
Zor muydu?.. ah dostlarım.. zor sadece bir kelime olarak kalır yanında..

Ben bunca yıl dimdik ayakta durmuşum. Bütün fırtınaları bir bir göğüslemişim tek başıma. Kimsenin yapamadığını yapmışım ve sayılı birkaç kadın şeften biri olmuşum. Sonra birkaç kendini bilmez arkamdan iş çeviriyor. İşin en kötüsü ben bunları fark etmiyorum sanıyorlar ya hastasıyım. Alçakça.. karaktersizce.. kendini ve haddini bilmezce.. Yazım tarzımın kopyala yapıştır mı ararsınız.. benim gibi foto çektiren mi.. benim ürünlerimi taklit etmeye çalışan mı.. insanlarla konuşma tarzımı bile.. ama işte içten gelen bir şey bu.  Ben hiçbir zaman yapmacık davranamadım. hiç öyle bir kaygımda olmadı. zaten ne kazandırır ki bana.. saçma yahu..gülmek lazım.. Ben düşmanımın bile dürüstünü severim. Bir kalitesi olmalı herşeyin. Hayat değişir her gün..olaylar kişiler.. değişmeyen tek şey nedir biliyor  musunuz? Kendinizsiniz.. Eğer vazgeçmezseniz..pes etmezseniz.. işte gerçek başarı budur.

 Eğer bir iki ürün yaptınız die hemen bir yerleriniz tavan yaparsa.. ustalarınıza boyun kaldırırsanız..kendinizi bir halt zannederseniz yani..yok olmaya mahkumsunuz.. Ben hala ustalarımın yanında saygı duruşuna geçiyorum. Bunca sene sonra bile.
Ben hayata dimdik durmuşken kimseye eyvallahım olmadı binlerce şükür.
Size bunları anlatmamın amacı her koşulda istediğiniz hayali gerçekleştirebileceğinizdir.
Eğer isterseniz..
Inanirsaniz..

Ben kendimden ve hayallerimden vazgeçmediğim için bugün benim.. olduğum gibi.riyasız..abartısız..
Ben dünyayı değiştireceğime inandım. ve oldu..
Eğer isterseniz herşey mümkündür..

The Modern Makers Fair

Just a few pictures of my stand at The Modern Makers Fair: I've got a lovely large space with a floor-to-ceiling picture window of the view overlooking the sea!



The Fair is arranged over 3 floors of the hotel, with dozens of exhibitors selling all sorts of beautiful handmade things. It's not too late if you're in Cornwall and fancy coming along; the Fair is on again tomorrow from 10am till 4pm. Tickets have not sold out so you can just turn up at the door; entry is free. The Bedruthan Steps Hotel is at Mawgan Porth on the north Coast about 15 minutes from Newquay.


Pakistan Dizisi: Bashar Momin


  Pakistan dizisi önyargımı biraz olsun kıran bir dizi izledim geçenlerde. 
   Baştan söyleyeyim Hindistan dizilerindeki gibi rüzgarlar essin, Rabba Veeler çalsın, uzun uzun bakışsınlar, yüzlerce bölüm sürsün de manyak gibi sabahlayayım diyorsanız bu diziye başlamayın azizim. (Sizi Maan Geet, Iss Pyaar, Rangrasiya gibi dizilere havale ediyorum.)

 Zindagi Gulzar Hai'yi yarım bırakıp Pakistan ile arama mesafe koymuştum. (Baydınız be gülüm, aşık değil iş arkadaşı gibiydiniz) 
   Bu arada o dizinin oyuncusu Fawad Khan aldı başını gidiyor Hindistan'da. 




  Gelelim dizimize, Bashar Momin. 
32 bölümden oluşuyor. Yaklaşık 40 dk bölümler. Bollywoodfanatikleri sitesinden izledim.

   Esas oğlan Bashar Momin, bir nevi mafya (Psikopat demek istiyorum müsadenizle). Bunun kız kardeşleri pek kıymetli. Biri evli, diğerinin nişanı bozulmuş. 
 Kızımız Rudaba'yı ise (Abisi Bashar Momin'in kız kardeşiyle evli) Amerika'dan biriyle uzaktan nişanlıyorlar ve olaylar böyle başlıyor.
  Dizi oğlan ve kız ağırlıklı olsa da Rudaba'nın nişanlısından bahsetmeden geçemeyeceğim. Yani bir insan bu kadar mı arabesk, bu kadar mı ezik olur? Sen Amerika görmüşsün, coolluk hak getire.
  Yine de, isyanım var ülen rollerinde süperdi. Zaten dumanlı bir dizi, bir de ben gece izledim, adamla beraber bunalıma girdik.

 Dizinin çoğu 6 kişi arasında geçiyor. Mekanlar çeşitli değil. Müslüman ülke olduklarından zaar eşler bile mesafeli. (Biz de müslüman ülkeyiz ama neyssa...) 




  Oyuncular çok başarılı, özellikle Rudaba. (Bashar'la konuşurkenki ıyy iğreniyorum senden bakışları, ağlak halleri falan çok iyi) 
  Bashar ise terör estiriyor evde (Kız iki kere bayıldı adamın bağırmasından).

   20-25 arası bölümlerde az sıkılsam da 25 ve sonrası beni şoka uğrattı diyebilirim. 

  Bashar'ın piyano çaldığı ve hakkında tüm gerçekleri öğrendiğimiz sahneler çok etkileyici (Kocaman bir dram var altında).  Ailevi sebeplerden mütevellit sevgiye inancı sarsılmış, acısını da kızdan çıkarıyor. (Anam babam gerildim o nasıl bir psikolojik baskıdır!) 
   Rudaba güçlü ve akıllı bir kız. Öyle güzel baş ediyor ki sonunda aşk kazanıyor.

   Evet Hint dizileri gibi romantizmin dibine vurmuyorlar ama değişik bir dizi. Gerçek hayata daha yakın. (Bacım özeniyorsunuz Hint dizilerine, bekarlar evde kalıyor, evliler kocasına çemkiriyor).

  Velhasıl-ı kelam izleyin Bashar Momin'i. Psikopat bir adamın nasıl aşık bir adama dönüştüğüne şahit olun. 

   Dizinin meşhur güzel müziği ise Tu Hi Tu. Dizide bol bol çalıyor. Görüntülerine bir bakıverin, heveslenin nevinden başka bir video paylaşayım.
   Aşk ile buyrun o halde... ❤ 



Ve çok etkilendiğim yeni Pakistan dizisi hemen şurda
Khuda Aur Mohabbat
 Nice to be making cushions again! I love to match all the delicious colours of my old Sylko threads to the fabrics I'm using,
 including this beautiful length of French curtain that I recently bought from Sue Meager.
 I'm making for a fair that I'm doing for the first time, The 'Modern Makers Fair' at the Bedruthan Steps Hotel near Newquay this coming weekend, 23rd and 24th April (see side bar). There will be over 50 contemporary designer-makers from Cornwall and further afield selling their work. Tickets are free but must be downloaded in advance via the website, by clicking here.
As well as cushions I will also have a collection of my shell collages for sale, both large and small, and plenty of handmade cards. 
I am on a 'demonstration' stand, so I shall be attempting to recreate a little corner of my studio and doing a bit of stitching and arranging so that visitors can get an idea of my working methods and what inspires me. Hope some of you can make it along! x

Rare Disease Day and the promises of personalized medicine

O ur daughter Ellen wrote the post that I republish below 3 years ago, and we've reposted it in commemoration of Rare Disease Day, Febru...